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Data and code availability Supplementary data including custom analysis code, self-identity heatmaps for all ape chromosomes, multiple-sequence alignments (CDS, introns, SST1), and satellite annotations are available from doi: 10.5281/zenodo.18022857 Supplementary Material Additional supplementary materials include: Acknowledgements This work was supported, in part, by the Intramural Research Program of the US National Human Genome Research Institute, National Institutes of Health (S.J.S., A.S., A.R., J.K., B.D.P., M.A.W., S.K., and A.M.P.) and grants: R01CA266339 (J.L.G., T.P.)